Package: StratifiedMedicine 1.0.5

StratifiedMedicine: Stratified Medicine

A toolkit for stratified medicine, subgroup identification, and precision medicine. Current tools include (1) filtering models (reduce covariate space), (2) patient-level estimate models (counterfactual patient-level quantities, such as the conditional average treatment effect), (3) subgroup identification models (find subsets of patients with similar treatment effects), and (4) treatment effect estimation and inference (for the overall population and discovered subgroups). These tools can be customized and are directly used in PRISM (patient response identifiers for stratified medicine; Jemielita and Mehrotra 2019 <arxiv:1912.03337>. This package is in beta and will be continually updated.

Authors:Thomas Jemielita [aut, cre]

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StratifiedMedicine/json (API)
NEWS

# Install 'StratifiedMedicine' in R:
install.packages('StratifiedMedicine', repos = c('https://thomasjemielita.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/thomasjemielita/stratifiedmedicine/issues

On CRAN:

Conda-Forge:

4.73 score 2 stars 27 scripts 288 downloads 11 exports 56 dependencies

Last updated 3 years agofrom:d2e4cfd709. Checks:1 OK, 7 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 07 2025
R-4.5-winWARNINGFeb 07 2025
R-4.5-macWARNINGFeb 07 2025
R-4.5-linuxWARNINGFeb 07 2025
R-4.4-winWARNINGFeb 07 2025
R-4.4-macWARNINGFeb 07 2025
R-4.3-winWARNINGFeb 07 2025
R-4.3-macWARNINGFeb 07 2025

Exports:filter_traingenerate_subgrp_dataparam_combineparam_estple_trainplot_dependenceplot_importanceplot_pleplot_treePRISMsubmod_train

Dependencies:backportscheckmateclicodetoolscoincolorspacedplyrfansifarverforeachFormulagenericsggpartyggplot2glmnetgluegtableinumisobanditeratorslabelinglatticelibcoinlifecyclemagrittrMASSMatrixmatrixStatsmgcvmodeltoolsmultcompmunsellmvtnormnlmepartykitpillarpkgconfigR6rangerRColorBrewerRcppRcppEigenrlangrpartsandwichscalesshapesurvivalTH.datatibbletidyselectutf8vctrsviridisLitewithrzoo

An Introduction to StratifiedMedicine

Thomas Jemielita

Rendered fromSM_PRISM.Rmdusingknitr::rmarkdownon Feb 07 2025.

Last update: 2022-04-03
Started: 2019-06-18

User Specific Models

Thomas Jemielita

Rendered fromSM_User_Models.Rmdusingknitr::rmarkdownon Feb 07 2025.

Last update: 2022-04-03
Started: 2019-10-09